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LOC102557987 carbohydrate sulfotransferase 6 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102557987, updated on 8-May-2024

Summary

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Gene symbol
LOC102557987
Gene description
carbohydrate sulfotransferase 6
See related
EnsemblRapid:ENSAMIG00015002401
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
CHST6
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 10 NC_081833.1 (77768855..77774099)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708686.1 (8087..12851, complement)

Chromosome 10 - NC_081833.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109282274 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene uncharacterized LOC132243625

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6
Names
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081833.1 Reference rAllMis1 Primary Assembly

    Range
    77768855..77774099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019483716.2 → XP_019339261.1  carbohydrate sulfotransferase 6 isoform X1

  2. XM_006278207.4 → XP_006278269.2  carbohydrate sulfotransferase 6 isoform X3

    Related
    ENSAMIP00015002886.1, ENSAMIT00015004228.1
    Conserved Domains (1) summary
    cl21551
    Location:183 → 351
    Sulfotransfer_1; Sulfotransferase domain

  3. XM_059714037.1 → XP_059570020.1  carbohydrate sulfotransferase 6 isoform X3

  4. XM_019483719.2 → XP_019339264.1  carbohydrate sulfotransferase 6 isoform X3

    Related
    ENSAMIP00015002882.1, ENSAMIT00015004224.1

  5. XM_019483718.2 → XP_019339263.1  carbohydrate sulfotransferase 6 isoform X2

Nucleotide Protein
Heading Accession and Version

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