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SGPP2 sphingosine-1-phosphate phosphatase 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102557931, updated on 8-May-2024

Summary

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Gene symbol
SGPP2
Gene description
sphingosine-1-phosphate phosphatase 2
Locus tag
Y1Q_0024472
See related
EnsemblRapid:ENSAMIG00015007944
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SGPP2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 7 NC_081830.1 (50400254..50521608)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711041.1 (3340302..3403492)

Chromosome 7 - NC_081830.1Genomic Context describing neighboring genes Neighboring gene paired box 3 Neighboring gene ring finger protein 228 Neighboring gene phenylalanyl-tRNA synthetase subunit beta Neighboring gene monoacylglycerol O-acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081830.1 Reference rAllMis1 Primary Assembly

    Range
    50400254..50521608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059730945.1 → XP_059586928.1  sphingosine-1-phosphate phosphatase 2 isoform X2

  2. XM_059730944.1 → XP_059586927.1  sphingosine-1-phosphate phosphatase 2 isoform X1

    Related
    ENSAMIP00015009773.1, ENSAMIT00015014232.1

  3. XM_059730946.1 → XP_059586929.1  sphingosine-1-phosphate phosphatase 2 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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