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LOC102549940 uncharacterized LOC102549940 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102549940, updated on 17-Aug-2024

Summary

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Symbol
LOC102549940provided by RGD
Full Name
uncharacterized LOC102549940provided by RGD
Primary source
RGD:7544889
See related
AllianceGenome:RGD:7544889
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Restricted expression toward (RPKM 34.2) See more
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Genomic context

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See LOC102549940 in Genome Data Viewer
Location:
1q35
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182060798..182067022, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (172626577..172632763, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (187967261..187973452, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ARL6 interacting reticulophagy regulator 1 Neighboring gene SMG1, nonsense mediated mRNA decay associated PI3K related kinase Neighboring gene uncharacterized LOC120099915 Neighboring gene uncharacterized LOC134485170 Neighboring gene C-type lectin domain containing 19A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC102549940

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    182060798..182067022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230147.5 → XP_006230209.1  uncharacterized protein LOC102549940

    See identical proteins and their annotated locations for XP_006230209.1

  2. XM_063280993.1 → XP_063137063.1  uncharacterized protein LOC102549940

  3. XM_063280992.1 → XP_063137062.1  uncharacterized protein LOC102549940

  4. XM_006230145.5 → XP_006230207.1  uncharacterized protein LOC102549940

    See identical proteins and their annotated locations for XP_006230207.1

  5. XM_006230146.5 → XP_006230208.1  uncharacterized protein LOC102549940

    See identical proteins and their annotated locations for XP_006230208.1

  6. XM_063280990.1 → XP_063137060.1  uncharacterized protein LOC102549940

  7. XM_006230143.5 → XP_006230205.1  uncharacterized protein LOC102549940

    See identical proteins and their annotated locations for XP_006230205.1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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