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LOC102546299 uncharacterized LOC102546299 [ Homo sapiens (human) ]

Gene ID: 102546299, updated on 22-Oct-2024

Summary

Gene symbol
LOC102546299
Gene description
uncharacterized LOC102546299
See related
Ensembl:ENSG00000241956
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC102546299 in Genome Data Viewer
Location:
5q34
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (164470279..164542984)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (165005187..165077861)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (163897285..163969990)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:163319797-163320352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23583 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:163342579-163343125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16592 Neighboring gene LSM1 homolog, mRNA degradation associated pseudogene 2 Neighboring gene MPRA-validated peak5565 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:163546314-163547513 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:163559545-163559889 Neighboring gene NANOG hESC enhancer GRCh37_chr5:163611210-163611711 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:163616370-163616914 Neighboring gene MPRA-validated peak5567 silencer Neighboring gene MPRA-validated peak5568 silencer Neighboring gene long intergenic non-protein coding RNA 3000 Neighboring gene long intergenic non-protein coding RNA 2143 Neighboring gene ribosomal protein S15 pseudogene 6 Neighboring gene RNA, U6 small nuclear 209, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105065.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091974, AC122698
    Related
    ENST00000767698.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    164470279..164542984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    165005187..165077861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)