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B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102545734, updated on 10-Mar-2024

Summary

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Gene symbol
B3GNT4
Gene description
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Also known as
LRRC43
Orthologs
human mouse all
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Genomic context

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See B3GNT4 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
14
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 32 Unlocalized Scaffold NW_021964219.1 (13824396..13843867)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882799.1 (6367451..6387237, complement)

NW_021964219.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene interleukin 31 Neighboring gene diablo IAP-binding mitochondrial protein Neighboring gene VPS33A core subunit of CORVET and HOPS complexes Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4
Names
leucine rich repeat containing 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964219.1 Reference VicPac3.1 Primary Assembly

    Range
    13824396..13843867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015243800.2 → XP_015099286.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6J0AQQ5
    Conserved Domains (3) summary
    COG4886
    Location:110 → 259
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:132 → 153
    LRR_1; leucine-rich repeat [structural motif]
    cl21608
    Location:723 → 912
    Galactosyl_T; Galactosyltransferase

  2. XM_015243801.2 → XP_015099287.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6J0ARL1
    Conserved Domains (3) summary
    COG4886
    Location:110 → 252
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:132 → 153
    LRR_1; leucine-rich repeat [structural motif]
    cl21608
    Location:716 → 905
    Galactosyl_T; Galactosyltransferase

  3. XM_015243802.2 → XP_015099288.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6J0ASX8
    Conserved Domains (2) summary
    COG4886
    Location:110 → 259
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:132 → 153
    LRR_1; leucine-rich repeat [structural motif]

  4. XM_015243803.2 → XP_015099289.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 isoform X4

    UniProtKB/TrEMBL
    A0A6J0AQ62
    Conserved Domains (1) summary
    cl21608
    Location:124 → 313
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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