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GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 [ Vicugna pacos (alpaca) ]

Gene ID: 102545687, updated on 10-Mar-2024

Summary

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Gene symbol
GALNT3
Gene description
polypeptide N-acetylgalactosaminyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See GALNT3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 5 Unlocalized Scaffold NW_021964164.1 (56906765..56946847)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882728.1 (161470..201261, complement)

NW_021964164.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 1 subunit alpha Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene cysteine and serine rich nuclear protein 3 Neighboring gene uncharacterized LOC116280621 Neighboring gene glutathione peroxidase 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 3
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964164.1 Reference VicPac3.1 Primary Assembly

    Range
    56906765..56946847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031678416.1 → XP_031534276.1  polypeptide N-acetylgalactosaminyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A6J3ANU1
    Conserved Domains (2) summary
    pfam00652
    Location:445 → 566
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:188 → 432
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_006201089.2 → XP_006201151.1  polypeptide N-acetylgalactosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I9I2X9
    Conserved Domains (2) summary
    cd02510
    Location:188 → 493
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:506 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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