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LIPC lipase C, hepatic type [ Vicugna pacos (alpaca) ]

Gene ID: 102544160, updated on 18-Sep-2024

Summary

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Gene symbol
LIPC
Gene description
lipase C, hepatic type
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See LIPC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_021988660.1 (2602284..2754278, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882821.1 (3748271..3899112)

NW_021988660.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene ADAM metallopeptidase domain 10 Neighboring gene uncharacterized LOC116277994 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC116277995 Neighboring gene aquaporin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables apolipoprotein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatic triacylglycerol lipase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021988660.1 Reference VicPac3.1 Primary Assembly

    Range
    2602284..2754278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031672729.1 → XP_031528589.1  hepatic triacylglycerol lipase isoform X2

    UniProtKB/TrEMBL
    A0A6J3A4F6
    Conserved Domains (2) summary
    pfam00151
    Location:23 → 350
    Lipase
    cl00011
    Location:353 → 495
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

  2. XM_006210975.3 → XP_006211037.1  hepatic triacylglycerol lipase isoform X2

    UniProtKB/TrEMBL
    A0A6J3A4F6
    Conserved Domains (2) summary
    pfam00151
    Location:23 → 350
    Lipase
    cl00011
    Location:353 → 495
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

  3. XM_031672728.1 → XP_031528588.1  hepatic triacylglycerol lipase isoform X1

    UniProtKB/TrEMBL
    A0A6J3A4P0
    Conserved Domains (2) summary
    pfam00151
    Location:102 → 429
    Lipase
    cl00011
    Location:432 → 574
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
Nucleotide Protein
Heading Accession and Version

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