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ATP6V1A ATPase H+ transporting V1 subunit A [ Vicugna pacos (alpaca) ]

Gene ID: 102542005, updated on 10-Mar-2024

Summary

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Gene symbol
ATP6V1A
Gene description
ATPase H+ transporting V1 subunit A
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See ATP6V1A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 1 Unlocalized Scaffold NW_021964155.1 (9137972..9191971, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882829.1 (585056..639571)

NW_021964155.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 23 Neighboring gene GRAM domain containing 1C Neighboring gene U6 spliceosomal RNA Neighboring gene N-alpha-acetyltransferase 50, NatE catalytic subunit Neighboring gene transfer RNA aspartic acid (anticodon AUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase catalytic subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964155.1 Reference VicPac3.1 Primary Assembly

    Range
    9137972..9191971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006211341.3 → XP_006211403.1  V-type proton ATPase catalytic subunit A

    See identical proteins and their annotated locations for XP_006211403.1

    UniProtKB/TrEMBL
    A0A6I9IGL8
    Conserved Domains (1) summary
    TIGR01042
    Location:18 → 610
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

  2. XM_031681098.1 → XP_031536958.1  V-type proton ATPase catalytic subunit A

    UniProtKB/TrEMBL
    A0A6I9IGL8
    Conserved Domains (1) summary
    TIGR01042
    Location:18 → 610
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit
Nucleotide Protein
Heading Accession and Version

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