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DSE dermatan sulfate epimerase [ Vicugna pacos (alpaca) ]

Gene ID: 102541817, updated on 10-Mar-2024

Summary

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Gene symbol
DSE
Gene description
dermatan sulfate epimerase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See DSE in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 8 Unlocalized Scaffold NW_021964168.1 (38964332..39025852, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882755.1 (7887537..7948634)

NW_021964168.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 3L Neighboring gene calcium homeostasis modulator family member 5 Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene TSPY like 1 Neighboring gene TSPY like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chondroitin-glucuronate 5-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dermatan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dermatan-sulfate epimerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964168.1 Reference VicPac3.1 Primary Assembly

    Range
    38964332..39025852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031680127.1 → XP_031535987.1  dermatan-sulfate epimerase isoform X1

    UniProtKB/TrEMBL
    A0A6J3ATT3

  2. XM_015240457.2 → XP_015095943.1  dermatan-sulfate epimerase isoform X1

    UniProtKB/TrEMBL
    A0A6J3ATT3

  3. XM_031680126.1 → XP_031535986.1  dermatan-sulfate epimerase isoform X1

    UniProtKB/TrEMBL
    A0A6J3ATT3

  4. XM_015240458.2 → XP_015095944.1  dermatan-sulfate epimerase isoform X2

    UniProtKB/TrEMBL
    A0A6J0ALD3

  5. XM_031680129.1 → XP_031535989.1  dermatan-sulfate epimerase isoform X4

    UniProtKB/TrEMBL
    A0A6J3AQB2

  6. XM_031680128.1 → XP_031535988.1  dermatan-sulfate epimerase isoform X3

    UniProtKB/TrEMBL
    A0A6J3AR49
Nucleotide Protein
Heading Accession and Version

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