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SLC35F5 solute carrier family 35 member F5 [ Vicugna pacos (alpaca) ]

Gene ID: 102537247, updated on 10-Mar-2024

Summary

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Gene symbol
SLC35F5
Gene description
solute carrier family 35 member F5
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See SLC35F5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 5 Unlocalized Scaffold NW_021964164.1 (83490910..83523496, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882702.1 (12775902..12808681)

NW_021964164.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116280656 Neighboring gene uncharacterized LOC107033109 Neighboring gene uncharacterized LOC107033822 Neighboring gene mitochondrial carrier homolog 2 pseudogene Neighboring gene actin related protein 3 Neighboring gene 40S ribosomal protein S8 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of peptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 35 member F5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964164.1 Reference VicPac3.1 Primary Assembly

    Range
    83490910..83523496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031678645.1 → XP_031534505.1  solute carrier family 35 member F5 isoform X2

    UniProtKB/TrEMBL
    A0A6J3AJ65
    Conserved Domains (1) summary
    COG0697
    Location:137 → 362
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  2. XM_006196104.2 → XP_006196166.1  solute carrier family 35 member F5 isoform X1

    See identical proteins and their annotated locations for XP_006196166.1

    UniProtKB/TrEMBL
    A0A6I9HWW0
    Conserved Domains (1) summary
    COG0697
    Location:200 → 425
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  3. XM_031678644.1 → XP_031534504.1  solute carrier family 35 member F5 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HWW0
    Conserved Domains (1) summary
    COG0697
    Location:200 → 425
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
Nucleotide Protein
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