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OGDH oxoglutarate dehydrogenase [ Vicugna pacos (alpaca) ]

Gene ID: 102537112, updated on 10-Mar-2024

Summary

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Gene symbol
OGDH
Gene description
oxoglutarate dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See OGDH in Genome Data Viewer
Location:
chromosome: 7
Exon count:
24
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 7 Unlocalized Scaffold NW_021964167.1 (30174208..30246024)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882978.1 (857553..929623)

NW_021964167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116281351 Neighboring gene transmembrane p24 trafficking protein 4 Neighboring gene uncharacterized LOC116281352 Neighboring gene transfer RNA threonine (anticodon GGU) Neighboring gene HLA class II histocompatibility antigen, DRB1-1 beta chain-like Neighboring gene zinc finger MIZ-type containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964167.1 Reference VicPac3.1 Primary Assembly

    Range
    30174208..30246024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015250290.2 → XP_015105776.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A6J0B126
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 994
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  2. XM_015250292.2 → XP_015105778.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A6J0B2Q6
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 979
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  3. XM_015250289.2 → XP_015105775.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A6J0AYI2
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 998
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  4. XM_015250291.2 → XP_015105777.1  2-oxoglutarate dehydrogenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A6J0B129
    Conserved Domains (1) summary
    PRK09404
    Location:49 → 983
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
Nucleotide Protein
Heading Accession and Version

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