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AMT aminomethyltransferase [ Vicugna pacos (alpaca) ]

Gene ID: 102534620, updated on 10-Mar-2024

Summary

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Gene symbol
AMT
Gene description
aminomethyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See AMT in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 17 Unlocalized Scaffold NW_021964193.1 (33014857..33020006)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882703.1 (868889..873966, complement)

NW_021964193.1Genomic Context describing neighboring genes Neighboring gene dystroglycan 1 Neighboring gene ubiquitin-conjugating enzyme E2 E1 pseudogene Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene T cell leukemia translocation altered Neighboring gene ras homolog family member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aminomethyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aminomethyltransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964193.1 Reference VicPac3.1 Primary Assembly

    Range
    33014857..33020006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006196299.3 → XP_006196361.1  aminomethyltransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A6I9HU89
    Conserved Domains (1) summary
    cl39066
    Location:8 → 401
    GCV_T; Aminomethyltransferase folate-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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