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B3GALT4 beta-1,3-galactosyltransferase 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102532667, updated on 10-Mar-2024

Summary

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Gene symbol
B3GALT4
Gene description
beta-1,3-galactosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See B3GALT4 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 20 Unlocalized Scaffold NW_021964198.1 (568115..569886)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882733.1 (12146230..12147721, complement)

NW_021964198.1Genomic Context describing neighboring genes Neighboring gene VPS52 subunit of GARP complex Neighboring gene ribosomal protein S18 Neighboring gene WD repeat domain 46 Neighboring gene prefoldin subunit 6 Neighboring gene ral guanine nucleotide dissociation stimulator like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 4
Names
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964198.1 Reference VicPac3.1 Primary Assembly

    Range
    568115..569886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006202129.3 → XP_006202191.1  beta-1,3-galactosyltransferase 4

    UniProtKB/TrEMBL
    A0A6I9I5N4
    Conserved Domains (1) summary
    cl21608
    Location:85 → 312
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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