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B4GALT1 beta-1,4-galactosyltransferase 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102530069, updated on 10-Mar-2024

Summary

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Gene symbol
B4GALT1
Gene description
beta-1,4-galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See B4GALT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_022040534.1 (7809983..7859226)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882971.1 (1153984..1203227)

NW_022040534.1Genomic Context describing neighboring genes Neighboring gene BAG cochaperone 1 Neighboring gene serine peptidase inhibitor Kazal type 4 Neighboring gene SMU1 DNA replication regulator and spliceosomal factor Neighboring gene uncharacterized LOC116279970 Neighboring gene DnaJ heat shock protein family (Hsp40) member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_022040534.1 Reference VicPac3.1 Primary Assembly

    Range
    7809983..7859226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006216825.2 → XP_006216887.1  beta-1,4-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A6I9IR85
    Conserved Domains (2) summary
    cd00899
    Location:177 → 395
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
    pfam15548
    Location:57 → 137
    DUF4655; Domain of unknown function (DUF4655)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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