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LSS lanosterol synthase [ Vicugna pacos (alpaca) ]

Gene ID: 102528619, updated on 10-Mar-2024

Summary

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Gene symbol
LSS
Gene description
lanosterol synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See LSS in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 1 Unlocalized Scaffold NW_021964153.1 (380888..402973)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882749.1 (382036..404095)

NW_021964153.1Genomic Context describing neighboring genes Neighboring gene ybeY metalloendoribonuclease Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene uncharacterized LOC116281003 Neighboring gene spermatogenesis and centriole associated 1 like Neighboring gene formimidoyltransferase cyclodeaminase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lanosterol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lanosterol synthase
Names
lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964153.1 Reference VicPac3.1 Primary Assembly

    Range
    380888..402973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006204934.3 → XP_006204996.1  lanosterol synthase

    UniProtKB/TrEMBL
    A0A6I9I9Q7
    Conserved Domains (1) summary
    TIGR01787
    Location:76 → 719
    squalene_cyclas; squalene/oxidosqualene cyclases
Nucleotide Protein
Heading Accession and Version

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