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SLC5A1 solute carrier family 5 member 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102527984, updated on 18-Sep-2024

Summary

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Gene symbol
SLC5A1
Gene description
solute carrier family 5 member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See SLC5A1 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
16
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 32 Unlocalized Scaffold NW_021964220.1 (592441..678265, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005883030.1 (115856..200381, complement)

NW_021964220.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 5 member 4 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene uncharacterized LOC116276669 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-glucose:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/glucose cotransporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964220.1 Reference VicPac3.1 Primary Assembly

    Range
    592441..678265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015250989.2 → XP_015106475.1  sodium/glucose cotransporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0B3W3
    Conserved Domains (1) summary
    cl00456
    Location:1 → 616
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_006218020.3 → XP_006218082.1  sodium/glucose cotransporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IP16
    Conserved Domains (1) summary
    cl00456
    Location:44 → 663
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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