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LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Vicugna pacos (alpaca) ]

Gene ID: 102527071, updated on 10-Mar-2024

Summary

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Gene symbol
LFNG
Gene description
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See LFNG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_022040723.1 (242603..250672)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882814.1 (4026747..4034855, complement)

NW_022040723.1Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 12 Neighboring gene galectin-related inter-fiber protein Neighboring gene tweety family member 3 Neighboring gene uncharacterized LOC116280027 Neighboring gene IQ motif containing E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_022040723.1 Reference VicPac3.1 Primary Assembly

    Range
    242603..250672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015244603.2 → XP_015100089.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A6J0AU91
    Conserved Domains (1) summary
    pfam02434
    Location:1 → 214
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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