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PLA2G2E phospholipase A2 group IIE [ Vicugna pacos (alpaca) ]

Gene ID: 102525068, updated on 18-Sep-2024

Summary

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Gene symbol
PLA2G2E
Gene description
phospholipase A2 group IIE
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See PLA2G2E in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 13 Unlocalized Scaffold NW_021964181.1 (11850219..11855094, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882704.1 (13799545..13803743, complement)

NW_021964181.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 186 Neighboring gene OTU deubiquitinase 3 Neighboring gene phospholipase A2 group IIA Neighboring gene phospholipase A2 group V

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arachidonate secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
group IIE secretory phospholipase A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964181.1 Reference VicPac3.1 Primary Assembly

    Range
    11850219..11855094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015237942.2 → XP_015093428.1  group IIE secretory phospholipase A2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0AH70
    Conserved Domains (1) summary
    cd00125
    Location:20 → 97
    PLA2c; Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent ...

  2. XM_006196719.3 → XP_006196781.1  group IIE secretory phospholipase A2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HX05
    Conserved Domains (1) summary
    pfam00068
    Location:23 → 127
    Phospholip_A2_1; Phospholipase A2
Nucleotide Protein
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