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TRPS1 transcriptional repressor GATA binding 1 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102521634, updated on 10-Mar-2024

Summary

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Gene symbol
TRPS1
Gene description
transcriptional repressor GATA binding 1
Locus tag
CB1_002448002
See related
EnsemblRapid:ENSCFEG00005016008
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See TRPS1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 25 NC_045720.1 (19208677..19449010)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006212614.1 (230211..467960)

Chromosome 25 - NC_045720.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116659775 Neighboring gene uncharacterized LOC116659774 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC116659826 Neighboring gene uncharacterized LOC116659827 Neighboring gene vesicle transport protein SFT2A-like Neighboring gene tigger transposable element-derived protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequences of wild and domestic bactrian camels. Bactrian Camels Genome Sequencing and Analysis Consortium, et al. Nat Commun, 2012. PMID 23149746, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045720.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    19208677..19449010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032467862.1 → XP_032323753.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A8B8S0N7
    Conserved Domains (1) summary
    cd00202
    Location:903 → 959
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_032467864.1 → XP_032323755.1  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    A0A8B8S201
    Conserved Domains (1) summary
    cd00202
    Location:896 → 952
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_032467865.1 → XP_032323756.1  zinc finger transcription factor Trps1 isoform X5

    UniProtKB/TrEMBL
    A0A8B8S0N0
    Conserved Domains (1) summary
    cd00202
    Location:890 → 946
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_032467863.1 → XP_032323754.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A8B8S0N7
    Related
    ENSCFEP00005026654.1, ENSCFET00005029632.1
    Conserved Domains (1) summary
    cd00202
    Location:903 → 959
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  5. XM_006193868.3 → XP_006193930.2  zinc finger transcription factor Trps1 isoform X4

    UniProtKB/TrEMBL
    A0A8B6YND6
    Related
    ENSCFEP00005026641.1, ENSCFET00005029618.1
    Conserved Domains (1) summary
    cd00202
    Location:894 → 950
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  6. XM_032467861.1 → XP_032323752.1  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A8B8S289
    Conserved Domains (1) summary
    cd00202
    Location:934 → 990
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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