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SDC2 syndecan 2 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102510571, updated on 10-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Locus tag
CB1_001652022
See related
EnsemblRapid:ENSCFEG00005013494
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 25 NC_045720.1 (33106588..33210443, complement)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006211827.1 (1721971..1826114, complement)

Chromosome 25 - NC_045720.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116659894 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC116659896 Neighboring gene uncharacterized LOC116659895 Neighboring gene phosphatidylserine synthase 1 Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045720.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    33106588..33210443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006191965.3 → XP_006192027.1  syndecan-2 isoform X1

    See identical proteins and their annotated locations for XP_006192027.1

    UniProtKB/TrEMBL
    A0A8B6YQK1, S9XJW3
    Related
    ENSCFEP00005022406.1, ENSCFET00005024934.1
    Conserved Domains (1) summary
    pfam01034
    Location:139 → 200
    Syndecan; Syndecan domain

  2. XM_014565392.2 → XP_014420878.1  syndecan-2 isoform X2

    UniProtKB/TrEMBL
    A0A8B7KGT7, S9XJW3
    Related
    ENSCFEP00005022441.1, ENSCFET00005024971.1
    Conserved Domains (1) summary
    pfam01034
    Location:125 → 186
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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