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SGCD sarcoglycan delta [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102508576, updated on 10-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Locus tag
CB1_000265010
See related
EnsemblRapid:ENSCFEG00005000128
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 3 NC_045698.1 (110102679..110944128)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006210441.1 (432773..978024, complement)

Chromosome 3 - NC_045698.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116662791 Neighboring gene uncharacterized LOC116659825 Neighboring gene uncharacterized LOC116662792 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC116662793 Neighboring gene enhancer of rudimentary homolog Neighboring gene T cell immunoglobulin and mucin domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan zeta-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045698.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    110102679..110944128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032477185.1 → XP_032333076.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8B7K4A2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014552116.2 → XP_014407602.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8B7K4A2
    Related
    ENSCFEP00005000101.1, ENSCFET00005000158.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_032477187.1 → XP_032333078.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8B8SSI4
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 242
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_032477186.1 → XP_032333077.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8B7K4A2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_006176442.3 → XP_006176504.1  delta-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_006176504.1

    UniProtKB/TrEMBL
    A0A8B7K4A2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_014552115.2 → XP_014407601.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8B7K4A2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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