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SGMS2 sphingomyelin synthase 2 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102484900, updated on 10-Mar-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Locus tag
TREES_T100004041
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159808.1 (4322353..4343434)

NW_006159808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106735147 Neighboring gene uncharacterized LOC114008260 Neighboring gene uncharacterized LOC106735148

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159808 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
Names
Phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159808.1 Reference TupChi_1.0

    Range
    4322353..4343434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006151175.3 → XP_006151237.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X2

    See identical proteins and their annotated locations for XP_006151237.1

    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_014588877.2 → XP_014444363.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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