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ACSM5 acyl-CoA synthetase medium chain family member 5 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102480846, updated on 10-Mar-2024

Summary

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Gene symbol
ACSM5
Gene description
acyl-CoA synthetase medium chain family member 5
Locus tag
TREES_T100019458
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See ACSM5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159864.1 (1076147..1102539, complement)

NW_006159864.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase medium chain family member 1 Neighboring gene mitochondrial import inner membrane translocase subunit TIM14 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene protein disulfide-isomerase-like protein of the testis

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159864 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-coenzyme A synthetase ACSM5, mitochondrial
Names
Acyl-coenzyme A synthetase ACSM5, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159864.1 Reference TupChi_1.0

    Range
    1076147..1102539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006153296.3 → XP_006153358.1  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X1

    UniProtKB/TrEMBL
    L9KI03
    Conserved Domains (2) summary
    COG0365
    Location:49 → 576
    Acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [Lipid transport and metabolism]
    cl17068
    Location:49 → 577
    AFD_class_I; Adenylate forming domain, Class I superfamily

  2. XM_014589669.2 → XP_014445155.1  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X2

    Conserved Domains (2) summary
    pfam00501
    Location:66 → 478
    AMP-binding; AMP-binding enzyme
    cl17068
    Location:49 → 513
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
Heading Accession and Version

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