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ASPH aspartate beta-hydroxylase [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102478772, updated on 10-Mar-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Locus tag
TREES_T100016097
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159926.1 (1422026..1651333, complement)

NW_006159926.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene clavesin 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159926 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159926.1 Reference TupChi_1.0

    Range
    1422026..1651333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027774298.1 → XP_027630099.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

  2. XM_027774299.1 → XP_027630100.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  3. XM_027774297.1 → XP_027630098.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  4. XM_027774296.1 → XP_027630097.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

  5. XM_027774300.1 → XP_027630101.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

Nucleotide Protein
Heading Accession and Version

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