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GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102476992, updated on 10-Mar-2024

Summary

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Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
Locus tag
TREES_T100004646
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See GPCPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006200713.1 (1008024..1073759)

NW_006200713.1Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 1 Neighboring gene myosin regulatory light chain 12B pseudogene Neighboring gene zinc finger protein ZPR1 pseudogene Neighboring gene prokineticin receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006200713 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1
Names
Putative glycerophosphocholine phosphodiesterase GPCPD1
glycerophosphocholine phosphodiesterase GDE1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006200713.1 Reference TupChi_1.0

    Range
    1008024..1073759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006162832.3 → XP_006162894.2  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    Conserved Domains (3) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 611
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  2. XM_014581854.2 → XP_014437340.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    Conserved Domains (3) summary
    cd08607
    Location:138 → 430
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:142 → 430
    GDPD; Glycerophosphoryl diester phosphodiesterase family
    cl21461
    Location:426 → 451
    Globin_like; Globin-like proteins
Nucleotide Protein
Heading Accession and Version

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