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PLA2G4E phospholipase A2 group IVE [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102470223, updated on 10-Mar-2024

Summary

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Gene symbol
PLA2G4E
Gene description
phospholipase A2 group IVE
Locus tag
TREES_T100001016
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See PLA2G4E in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006160123.1 (1364088..1455129)

NW_006160123.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene phospholipase A2 group IVD Neighboring gene importin subunit alpha-1 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene Neighboring gene EH domain containing 4 Neighboring gene spectrin beta, non-erythrocytic 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006160123 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic phospholipase A2 epsilon
Names
Cytosolic phospholipase A2 epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006160123.1 Reference TupChi_1.0

    Range
    1364088..1455129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006158717.1 → XP_006158779.1  cytosolic phospholipase A2 epsilon

    UniProtKB/TrEMBL
    L9JGH7
    Conserved Domains (3) summary
    cd07201
    Location:315 → 858
    cPLA2_Grp-IVB-IVD-IVE-IVF; Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent
    cd04036
    Location:69 → 177
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    smart00022
    Location:319 → 799
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit
Nucleotide Protein
Heading Accession and Version

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