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LINC02219 long intergenic non-protein coding RNA 2219 [ Homo sapiens (human) ]

Gene ID: 102467655, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02219provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2219provided by HGNC
Primary source
HGNC:HGNC:53086
See related
Ensembl:ENSG00000253787 AllianceGenome:HGNC:53086
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.8) See more
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Genomic context

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Location:
5q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (68189876..68198407)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (69012099..69020632)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (67485704..67494235)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1232, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67483027-67483570 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:67483571-67484114 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:67489387-67489926 Neighboring gene eukaryotic translation elongation factor 1 beta 2 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16072 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16073 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:67545349-67545966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:67545967-67546584 Neighboring gene phosphoinositide-3-kinase regulatory subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22631 Neighboring gene Sharpr-MPRA regulatory region 5177 Neighboring gene uncharacterized LOC105379013 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:67729541-67730740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22634 Neighboring gene Sharpr-MPRA regulatory regions 11081 and 12221 Neighboring gene Sharpr-MPRA regulatory region 5137 Neighboring gene uncharacterized LOC105379012 Neighboring gene uncharacterized LOC105379011

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105003.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104120
    Related
    ENST00000520762.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    68189876..68198407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    69012099..69020632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases