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LINC01017 long intergenic non-protein coding RNA 1017 [ Homo sapiens (human) ]

Gene ID: 102467075, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01017provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1017provided by HGNC
Primary source
HGNC:HGNC:50641
See related
Ensembl:ENSG00000250716 AllianceGenome:HGNC:50641
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5p15.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (3496372..3504004, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (3415716..3422700, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (3496486..3504118, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:3176917-3178116 Neighboring gene VISTA enhancer hs603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3185307-3185822 Neighboring gene VISTA enhancer hs533 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3191198-3191363 Neighboring gene long intergenic non-protein coding RNA 1377 Neighboring gene VISTA enhancer hs754 Neighboring gene NANOG hESC enhancer GRCh37_chr5:3251839-3252659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3266942-3267940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301153-3301654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301655-3302154 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:3310881-3312080 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3325507-3325688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346175-3346676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346677-3347176 Neighboring gene long intergenic non-protein coding RNA 1019 Neighboring gene long intergenic non-protein coding RNA 2162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3490824-3491324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3510857-3511356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3511427-3511928 Neighboring gene VISTA enhancer hs261 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3518997-3519497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3520242-3520742 Neighboring gene Sharpr-MPRA regulatory region 3294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3598809-3599471 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3599472-3600133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3600797-3601457 Neighboring gene uncharacterized LOC107986399 Neighboring gene iroquois homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104618.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026743, BQ428982
    Related
    ENST00000508823.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    3496372..3504004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    3415716..3422700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases