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VCAM1 vascular cell adhesion molecule 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102463382, updated on 10-Mar-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
See related
Ensembl:ENSPSIG00000011008
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005854265.1 (4543049..4553024)

NW_005854265.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 14A Neighboring gene G protein-coupled receptor 88 Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene dihydrolipoamide branched chain transacylase E2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005854265 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005854265.1 Reference PelSin_1.0 Primary Assembly

    Range
    4543049..4553024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006119811.3 → XP_006119873.1  vascular cell adhesion protein 1 isoform X1

    UniProtKB/TrEMBL
    K7FW43
    Related
    ENSPSIP00000012253.1, ENSPSIT00000012312.1
    Conserved Domains (3) summary
    smart00408
    Location:431 → 491
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:425 → 501
    IG_like; Immunoglobulin like
    cl11960
    Location:129 → 224
    Ig; Immunoglobulin domain

  2. XM_006119812.3 → XP_006119874.1  vascular cell adhesion protein 1 isoform X2

    Conserved Domains (3) summary
    smart00408
    Location:431 → 491
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:425 → 501
    IG_like; Immunoglobulin like
    cl11960
    Location:129 → 224
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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