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MDH1 malate dehydrogenase 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102463290, updated on 26-Jun-2024

Summary

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Gene symbol
MDH1
Gene description
malate dehydrogenase 1
See related
Ensembl:ENSPSIG00000014797
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See MDH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852619.1 (1398807..1424051)

NW_005852619.1Genomic Context describing neighboring genes Neighboring gene EH domain binding protein 1 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene uncharacterized LOC106731378 Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene VPS54 subunit of GARP complex Neighboring gene pellino E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005852619 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxaloacetate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005852619.1 Reference PelSin_1.0 Primary Assembly

    Range
    1398807..1424051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006114072.3 → XP_006114134.1  malate dehydrogenase, cytoplasmic

    UniProtKB/TrEMBL
    K7G8Q8
    Related
    ENSPSIP00000016669.1, ENSPSIT00000016745.1
    Conserved Domains (2) summary
    TIGR01759
    Location:2 → 327
    MalateDH-SF1; malate dehydrogenase
    cd01336
    Location:3 → 327
    MDH_cytoplasmic_cytosolic; Cytoplasmic and cytosolic Malate dehydrogenases
Nucleotide Protein
Heading Accession and Version

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