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GAPDH glyceraldehyde-3-phosphate dehydrogenase [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102462433, updated on 10-Mar-2024

Summary

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Gene symbol
GAPDH
Gene description
glyceraldehyde-3-phosphate dehydrogenase
See related
Ensembl:ENSPSIG00000016258
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
PsGAPDH
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See GAPDH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855478.1 (835455..838909, complement)

NW_005855478.1Genomic Context describing neighboring genes Neighboring gene NOP2 nucleolar protein Neighboring gene intermediate filament family orphan 1 Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene small nucleolar RNA U85 Neighboring gene mitochondrial ribosomal protein L51

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855478 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive survey of carapacial ridge-specific genes in turtle implies co-option of some regulatory genes in carapace evolution. Kuraku S, et al. Evol Dev, 2005 Jan-Feb. PMID 15642085
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glyceraldehyde-3-phosphate dehydrogenase
Names
Peptidyl-cysteine S-nitrosylase GAPDH
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) homologue
NP_001273856.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286927.1 → NP_001273856.1  glyceraldehyde-3-phosphate dehydrogenase

    See identical proteins and their annotated locations for NP_001273856.1

    Status: PROVISIONAL

    Source sequence(s)
    AB124567
    UniProtKB/Swiss-Prot
    Q5R2J2
    UniProtKB/TrEMBL
    K7GDM5
    Related
    ENSPSIP00000018386.1, ENSPSIT00000018472.1
    Conserved Domains (3) summary
    PTZ00023
    Location:2 → 333
    PTZ00023; glyceraldehyde-3-phosphate dehydrogenase; Provisional
    pfam00044
    Location:2 → 150
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:155 → 312
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855478.1 Reference PelSin_1.0 Primary Assembly

    Range
    835455..838909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R2J2.1 GenPept UniProtKB/Swiss-Prot:Q5R2J2

Gene LinkOut

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