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LOC102460969 nuclear cap-binding protein subunit 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102460969, updated on 25-Jan-2024

Summary

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Gene symbol
LOC102460969
Gene description
nuclear cap-binding protein subunit 1
See related
Ensembl:ENSPSIG00000009558
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
NCBP1
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Genomic context

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See LOC102460969 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852898.1 (12907..48965)

NW_005852898.1Genomic Context describing neighboring genes Neighboring gene nuclear cap-binding protein subunit 1-like Neighboring gene uncharacterized LOC112544433 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005852898 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005852898.1 Reference PelSin_1.0 Primary Assembly

    Range
    12907..48965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025180554.1 → XP_025036339.1  nuclear cap-binding protein subunit 1

    UniProtKB/TrEMBL
    K7FR76
    Related
    ENSPSIP00000010536.1, ENSPSIT00000010589.1
    Conserved Domains (2) summary
    pfam09088
    Location:68 → 187
    MIF4G_like; MIF4G like
    pfam09090
    Location:202 → 481
    MIF4G_like_2; MIF4G like
Nucleotide Protein
Heading Accession and Version

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