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GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102459594, updated on 10-Mar-2024

Summary

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Gene symbol
GALNT15
Gene description
polypeptide N-acetylgalactosaminyltransferase 15
See related
Ensembl:ENSPSIG00000007294
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See GALNT15 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005858000.1 (2423967..2470598)

NW_005858000.1Genomic Context describing neighboring genes Neighboring gene biotinidase Neighboring gene ankyrin repeat domain 28 Neighboring gene vitelline membrane outer layer protein 1 homolog Neighboring gene diphthamide biosynthesis 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005858000 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005858000.1 Reference PelSin_1.0 Primary Assembly

    Range
    2423967..2470598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006133245.3 → XP_006133307.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X2

    UniProtKB/TrEMBL
    K7FJ99
    Conserved Domains (3) summary
    cd02510
    Location:202 → 470
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:484 → 605
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:482 → 603
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_014578662.2 → XP_014434148.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X3

    UniProtKB/TrEMBL
    K7FJ99
    Conserved Domains (3) summary
    cd00161
    Location:459 → 580
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:457 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:202 → 445
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_006133244.3 → XP_006133306.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    K7FJ99
    Related
    ENSPSIP00000008109.1, ENSPSIT00000008152.1
    Conserved Domains (3) summary
    cd02510
    Location:202 → 501
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:515 → 636
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:513 → 634
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_025189740.1 → XP_025045525.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X4

    Conserved Domains (1) summary
    cd02510
    Location:202 → 501
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  5. XM_025189741.1 → XP_025045526.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X5

    Conserved Domains (2) summary
    cd02510
    Location:33 → 332
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:344 → 465
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  6. XM_025189742.1 → XP_025045527.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X6

    Conserved Domains (2) summary
    cd02510
    Location:5 → 279
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:291 → 412
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RNA

  1. XR_003091210.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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