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SGMS1 sphingomyelin synthase 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102458830, updated on 10-Mar-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
See related
Ensembl:ENSPSIG00000009989
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005854747.1 (2104322..2324262)

NW_005854747.1Genomic Context describing neighboring genes Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene APOBEC1 complementation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005854747 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005854747.1 Reference PelSin_1.0 Primary Assembly

    Range
    2104322..2324262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006121457.3 → XP_006121519.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_006121519.1

    UniProtKB/TrEMBL
    K7FSR2
    Related
    ENSPSIP00000011062.1, ENSPSIT00000011118.1
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_025183845.1 → XP_025039630.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    K7FSR2
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_025183843.1 → XP_025039628.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    K7FSR2
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_006121460.3 → XP_006121522.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_006121522.1

    UniProtKB/TrEMBL
    K7FSR2
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_006121461.3 → XP_006121523.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_006121523.1

    UniProtKB/TrEMBL
    K7FSR2
    Related
    ENSPSIP00000011072.1, ENSPSIT00000011128.1
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_006121462.3 → XP_006121524.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    See identical proteins and their annotated locations for XP_006121524.1

    UniProtKB/TrEMBL
    K7FSR2
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_025183846.1 → XP_025039631.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    K7FSR2
    Conserved Domains (2) summary
    cd09514
    Location:7 → 78
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:281 → 354
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

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