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CSPG4 chondroitin sulfate proteoglycan 4 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102456884, updated on 10-Mar-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
See related
Ensembl:ENSPSIG00000014404
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855909.1 (2976632..3028783)

NW_005855909.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112546314 Neighboring gene ciliary microtubule associated protein 1C Neighboring gene sorting nexin 33 Neighboring gene snurportin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855909 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855909.1 Reference PelSin_1.0 Primary Assembly

    Range
    2976632..3028783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025186234.1 → XP_025042019.1  chondroitin sulfate proteoglycan 4

    UniProtKB/TrEMBL
    K7G782
    Related
    ENSPSIP00000016143.1, ENSPSIT00000016219.1
    Conserved Domains (3) summary
    smart00282
    Location:45 → 165
    LamG; Laminin G domain
    cd00110
    Location:199 → 358
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1479 → 1586
    Cadherin_3; Cadherin-like
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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