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LOC102456831 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102456831, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102456831
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
See related
Ensembl:ENSPSIG00000010254
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
NDST4
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Genomic context

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See LOC102456831 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852158.1 (1138439..1318865)

NW_005852158.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112543652 Neighboring gene CAP-Gly domain-containing linker protein 1-like Neighboring gene 2-hydroxyacylsphingosine 1-beta-galactosyltransferase-like Neighboring gene 2-hydroxyacylsphingosine 1-beta-galactosyltransferase pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005852158 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005852158.1 Reference PelSin_1.0 Primary Assembly

    Range
    1138439..1318865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006112755.3 → XP_006112817.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    See identical proteins and their annotated locations for XP_006112817.1

    UniProtKB/TrEMBL
    K7FTU5
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_006112754.3 → XP_006112816.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    See identical proteins and their annotated locations for XP_006112816.1

    UniProtKB/TrEMBL
    K7FTU5
    Related
    ENSPSIP00000011455.1, ENSPSIT00000011512.1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_014580495.2 → XP_014435981.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:534 → 785
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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