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PLD4 phospholipase D family member 4 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102455091, updated on 10-Mar-2024

Summary

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Gene symbol
PLD4
Gene description
phospholipase D family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See PLD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857741.1 (980878..1007155)

NW_005857741.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112547372 Neighboring gene centrosomal protein 170B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857741 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic progenitor cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase D4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857741.1 Reference PelSin_1.0 Primary Assembly

    Range
    980878..1007155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006132427.3 → XP_006132489.1  phospholipase D4 isoform X2

    Conserved Domains (2) summary
    PHA02820
    Location:96 → 509
    PHA02820; phospholipase-D-like protein; Provisional
    cl15239
    Location:310 → 497
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  2. XM_025189335.1 → XP_025045120.1  phospholipase D4 isoform X1

    Conserved Domains (2) summary
    cl15239
    Location:334 → 521
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    cl28150
    Location:120 → 533
    PLDc; Phospholipase D Active site motif
Nucleotide Protein
Heading Accession and Version

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