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GALNTL6 polypeptide N-acetylgalactosaminyltransferase like 6 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102455074, updated on 10-Mar-2024

Summary

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Gene symbol
GALNTL6
Gene description
polypeptide N-acetylgalactosaminyltransferase like 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See GALNTL6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005856097.1 (803552..1640136)

NW_005856097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102454898 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene high mobility group box 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005856097 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005856097.1 Reference PelSin_1.0 Primary Assembly

    Range
    803552..1640136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014575467.2 → XP_014430953.1  polypeptide N-acetylgalactosaminyltransferase-like 6

    Conserved Domains (4) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:461 → 589
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:145 → 370
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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