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AGPS alkylglycerone phosphate synthase [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102454366, updated on 10-Mar-2024

Summary

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Gene symbol
AGPS
Gene description
alkylglycerone phosphate synthase
See related
Ensembl:ENSPSIG00000002901
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See AGPS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005854041.1 (2191609..2350082, complement)

NW_005854041.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 11A Neighboring gene uncharacterized LOC112545184 Neighboring gene intraflagellar transport 70B Neighboring gene uncharacterized LOC106731727 Neighboring gene NFE2 like bZIP transcription factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005854041 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alkylglycerone-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkyldihydroxyacetonephosphate synthase, peroxisomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005854041.1 Reference PelSin_1.0 Primary Assembly

    Range
    2191609..2350082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006119452.3 → XP_006119514.1  alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1

    UniProtKB/TrEMBL
    K7F4Q1
    Conserved Domains (3) summary
    COG0277
    Location:150 → 602
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:156 → 297
    FAD_binding_4; FAD binding domain
    pfam02913
    Location:334 → 607
    FAD-oxidase_C; FAD linked oxidases, C-terminal domain

  2. XM_006119454.3 → XP_006119516.1  alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X2

    UniProtKB/TrEMBL
    K7F4Q1
    Related
    ENSPSIP00000003011.1, ENSPSIT00000003023.1
    Conserved Domains (3) summary
    COG0277
    Location:119 → 571
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:125 → 266
    FAD_binding_4; FAD binding domain
    pfam02913
    Location:303 → 576
    FAD-oxidase_C; FAD linked oxidases, C-terminal domain

RNA

  1. XR_003088629.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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