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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102451002, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
See related
Ensembl:ENSPSIG00000011842
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005853176.1 (2902535..3050842)

NW_005853176.1Genomic Context describing neighboring genes Neighboring gene SNW domain containing 1 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene isthmin 2 Neighboring gene uncharacterized LOC102451635

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005853176 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005853176.1 Reference PelSin_1.0 Primary Assembly

    Range
    2902535..3050842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014569975.1 → XP_014425461.1  serine palmitoyltransferase 2

    UniProtKB/TrEMBL
    K7FYX9
    Related
    ENSPSIP00000013239.1, ENSPSIT00000013302.1
    Conserved Domains (2) summary
    PLN02483
    Location:67 → 542
    PLN02483; serine palmitoyltransferase
    TIGR00858
    Location:168 → 529
    bioF; 8-amino-7-oxononanoate synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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