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HPSE heparanase [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102450514, updated on 10-Mar-2024

Summary

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Gene symbol
HPSE
Gene description
heparanase
See related
Ensembl:ENSPSIG00000015879
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See HPSE in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005851563.1 (1374920..1409213)

NW_005851563.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene helicase, POLQ like Neighboring gene uncharacterized LOC112544904 Neighboring gene coenzyme Q2, polyprenyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005851563 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005851563.1 Reference PelSin_1.0 Primary Assembly

    Range
    1374920..1409213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014570808.2 → XP_014426294.1  heparanase

    UniProtKB/TrEMBL
    K7GCN1
    Related
    ENSPSIP00000018042.1, ENSPSIT00000018125.1
    Conserved Domains (1) summary
    pfam03662
    Location:114 → 301
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
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Gene LinkOut

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