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CALR3 calreticulin 3 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102447258, updated on 10-Mar-2024

Summary

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Gene symbol
CALR3
Gene description
calreticulin 3
See related
Ensembl:ENSPSIG00000013549
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See CALR3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855041.1 (883389..920814)

NW_005855041.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member E1 Neighboring gene chromosome unknown C19orf44 homolog Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene uncharacterized LOC112545686 Neighboring gene epidermal growth factor receptor pathway substrate 15 like 1 Neighboring gene KLF transcription factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855041 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855041.1 Reference PelSin_1.0 Primary Assembly

    Range
    883389..920814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025184349.1 → XP_025040134.1  calreticulin-3 isoform X2

    Conserved Domains (1) summary
    pfam00262
    Location:23 → 269
    Calreticulin; Calreticulin family

  2. XM_025184348.1 → XP_025040133.1  calreticulin-3 isoform X1

    UniProtKB/TrEMBL
    K7G4P1
    Related
    ENSPSIP00000015252.1, ENSPSIT00000015323.1
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 332
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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