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CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102447091, updated on 10-Mar-2024

Summary

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Gene symbol
CSGALNACT1
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSPSIG00000012585
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See CSGALNACT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855697.1 (190193..268525)

NW_005855697.1Genomic Context describing neighboring genes Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene integrator complex subunit 10 Neighboring gene SH2 domain containing 4A Neighboring gene glutathione-disulfide reductase Neighboring gene protein phosphatase 2 catalytic subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855697 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855697.1 Reference PelSin_1.0 Primary Assembly

    Range
    190193..268525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006125363.3 → XP_006125425.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125425.1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_025185793.1 → XP_025041578.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_025185792.1 → XP_025041577.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_006125366.3 → XP_006125428.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125428.1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_025185794.1 → XP_025041579.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_006125365.3 → XP_006125427.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125427.1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_006125371.3 → XP_006125433.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125433.1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  8. XM_006125369.3 → XP_006125431.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125431.1

    UniProtKB/TrEMBL
    K7G1C3
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  9. XM_006125367.2 → XP_006125429.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_006125429.1

    UniProtKB/TrEMBL
    K7G1C3
    Related
    ENSPSIP00000014083.1, ENSPSIT00000014148.1
    Conserved Domains (1) summary
    cl11394
    Location:67 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RNA

  1. XR_003089806.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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