U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FREM1 FRAS1 related extracellular matrix 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102446747, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
FREM1
Gene description
FRAS1 related extracellular matrix 1
See related
Ensembl:ENSPSIG00000009646
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FREM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005853660.1 (1260312..1379173)

NW_005853660.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene bone morphogenetic protein 2-B-like Neighboring gene uncharacterized LOC106731599 Neighboring gene cerberus 1, DAN family BMP antagonist Neighboring gene zinc finger DHHC-type palmitoyltransferase 21

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005853660 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
FRAS1-related extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005853660.1 Reference PelSin_1.0 Primary Assembly

    Range
    1260312..1379173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006117829.3 → XP_006117891.1  FRAS1-related extracellular matrix protein 1 isoform X3

    UniProtKB/TrEMBL
    K7FSD3
    Related
    ENSPSIP00000010943.1, ENSPSIT00000010999.1
    Conserved Domains (3) summary
    smart00034
    Location:2059 → 2181
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:357 → 501
    Cadherin_3; Cadherin-like
    cl02522
    Location:1744 → 1830
    Calx-beta; Calx-beta domain

  2. XM_014570840.2 → XP_014426326.1  FRAS1-related extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    K7FSD3
    Related
    ENSPSIP00000010879.1, ENSPSIT00000010935.1
    Conserved Domains (3) summary
    smart00034
    Location:1999 → 2121
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:357 → 501
    Cadherin_3; Cadherin-like
    cl02522
    Location:1744 → 1830
    Calx-beta; Calx-beta domain

  3. XM_014570841.2 → XP_014426327.1  FRAS1-related extracellular matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    K7FSD3
    Conserved Domains (3) summary
    smart00034
    Location:1937 → 2059
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:357 → 501
    Cadherin_3; Cadherin-like
    cl02522
    Location:1682 → 1768
    Calx-beta; Calx-beta domain

RNA

  1. XR_001367860.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.