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SGCG sarcoglycan gamma [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102446741, updated on 10-Mar-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
Ensembl:ENSPSIG00000008037
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005871027.1 (2423836..2590598)

NW_005871027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112544007 Neighboring gene uncharacterized LOC112544012 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC102447810 Neighboring gene uncharacterized LOC112544001

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871027 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005871027.1 Reference PelSin_1.0 Primary Assembly

    Range
    2423836..2590598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006138869.3 → XP_006138931.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:37 → 285
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025179380.1 → XP_025035165.1  gamma-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    K7FLB1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_025179381.1 → XP_025035166.1  gamma-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    K7FLB1
    Related
    ENSPSIP00000008821.1, ENSPSIT00000008867.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_025179378.1 → XP_025035163.1  gamma-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:27 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_025179379.1 → XP_025035164.1  gamma-sarcoglycan isoform X3

Nucleotide Protein
Heading Accession and Version

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