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RTN4RL1 reticulon 4 receptor like 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102446301, updated on 10-Mar-2024

Summary

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Gene symbol
RTN4RL1
Gene description
reticulon 4 receptor like 1
See related
Ensembl:ENSPSIG00000001112
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See RTN4RL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857384.1 (138165..152512, complement)

NW_005857384.1Genomic Context describing neighboring genes Neighboring gene SET and MYND domain containing 4 Neighboring gene replication protein A1 Neighboring gene diphthamide biosynthesis 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857384 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4 receptor-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857384.1 Reference PelSin_1.0 Primary Assembly

    Range
    138165..152512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025188774.1 → XP_025044559.1  reticulon-4 receptor-like 1 isoform X1

    Conserved Domains (4) summary
    sd00033
    Location:36 → 57
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:173 → 232
    LRR_8; Leucine rich repeat
    cl15307
    Location:254 → 290
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
    cl26018
    Location:44 → 187
    NEL; C-terminal novel E3 ligase, LRR-interacting

  2. XM_025188775.1 → XP_025044560.1  reticulon-4 receptor-like 1 isoform X2

    UniProtKB/TrEMBL
    K7EZA0
    Related
    ENSPSIP00000001110.1, ENSPSIT00000001112.1
    Conserved Domains (3) summary
    sd00033
    Location:2 → 23
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:139 → 198
    LRR_8; Leucine rich repeat
    cl15307
    Location:220 → 256
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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