U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GALC galactosylceramidase [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102445851, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GALC
Gene description
galactosylceramidase
See related
Ensembl:ENSPSIG00000002641
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GALC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005851929.1 (106675..159158)

NW_005851929.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 65 Neighboring gene uncharacterized LOC112546899 Neighboring gene uncharacterized LOC112546890

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005851929 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
galactocerebrosidase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005851929.1 Reference PelSin_1.0 Primary Assembly

    Range
    106675..159158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006112029.3 → XP_006112091.1  galactocerebrosidase isoform X1

    UniProtKB/TrEMBL
    K7F3W6
    Related
    ENSPSIP00000002723.1, ENSPSIT00000002732.1
    Conserved Domains (2) summary
    pfam02057
    Location:2 → 677
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:132 → 322
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  2. XM_006112031.3 → XP_006112093.1  galactocerebrosidase isoform X3

    See identical proteins and their annotated locations for XP_006112093.1

    UniProtKB/TrEMBL
    K7F3W6
    Conserved Domains (2) summary
    pfam02057
    Location:1 → 567
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:22 → 212
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  3. XM_006112030.3 → XP_006112092.1  galactocerebrosidase isoform X2

    UniProtKB/TrEMBL
    K7F3W6
    Conserved Domains (2) summary
    pfam02057
    Location:87 → 660
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:115 → 305
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  4. XM_006112032.3 → XP_006112094.1  galactocerebrosidase isoform X3

    See identical proteins and their annotated locations for XP_006112094.1

    UniProtKB/TrEMBL
    K7F3W6
    Conserved Domains (2) summary
    pfam02057
    Location:1 → 567
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:22 → 212
    Glyco_hydro_30; O-Glycosyl hydrolase family 30
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.