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ACER1 alkaline ceramidase 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102445820, updated on 10-Mar-2024

Summary

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Gene symbol
ACER1
Gene description
alkaline ceramidase 1
See related
Ensembl:ENSPSIG00000004328
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See ACER1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005855713.1 (1097892..1130803, complement)

NW_005855713.1Genomic Context describing neighboring genes Neighboring gene lamin B2 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B Neighboring gene unconventional myosin-If

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005855713 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005855713.1 Reference PelSin_1.0 Primary Assembly

    Range
    1097892..1130803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006125536.3 → XP_006125598.1  alkaline ceramidase 1 isoform X2

    Conserved Domains (1) summary
    pfam05875
    Location:3 → 203
    Ceramidase; Ceramidase

  2. XM_006125535.3 → XP_006125597.1  alkaline ceramidase 1 isoform X1

    UniProtKB/TrEMBL
    K7F9B0
    Related
    ENSPSIP00000004620.1, ENSPSIT00000004646.1
    Conserved Domains (1) summary
    pfam05875
    Location:3 → 249
    Ceramidase; Ceramidase
Nucleotide Protein
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