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NCAM1 neural cell adhesion molecule 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102444165, updated on 10-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
See related
Ensembl:ENSPSIG00000006326
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005851747.1 (2129708..2424658)

NW_005851747.1Genomic Context describing neighboring genes Neighboring gene placenta-expressed transcript 1 protein-like Neighboring gene uncharacterized LOC112545524 Neighboring gene uncharacterized LOC112545522 Neighboring gene mucin-5AC-like Neighboring gene tetratricopeptide repeat domain 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005851747 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005851747.1 Reference PelSin_1.0 Primary Assembly

    Range
    2129708..2424658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014572650.2 → XP_014428136.1  neural cell adhesion molecule 1 isoform X3

    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:613 → 696
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  2. XM_014572645.2 → XP_014428131.1  neural cell adhesion molecule 1 isoform X1

    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:638 → 721
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  3. XM_014572655.2 → XP_014428141.1  neural cell adhesion molecule 1 isoform X4

    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:612 → 695
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  4. XM_006111228.3 → XP_006111290.1  neural cell adhesion molecule 1 isoform X2

    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:628 → 711
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  5. XM_006111230.3 → XP_006111292.1  neural cell adhesion molecule 1 isoform X6

    UniProtKB/TrEMBL
    K7FGL1
    Related
    ENSPSIP00000007171.1, ENSPSIT00000007212.1
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:602 → 685
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  6. XM_014572663.2 → XP_014428149.1  neural cell adhesion molecule 1 isoform X7

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (9) summary
    pfam05887
    Location:792 → 875
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:638 → 721
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  7. XM_006111229.3 → XP_006111291.1  neural cell adhesion molecule 1 isoform X5

    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:603 → 686
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  8. XM_025183823.1 → XP_025039608.1  neural cell adhesion molecule 1 isoform X9

    UniProtKB/TrEMBL
    K7FGJ6
    Related
    ENSPSIP00000007156.1, ENSPSIT00000007197.1
    Conserved Domains (6) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig_NCAM-1; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00409
    Location:423 → 504
    IG; Immunoglobulin
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:638 → 721
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  9. XM_014572671.2 → XP_014428157.1  neural cell adhesion molecule 1 isoform X10

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:638 → 721
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  10. XM_014572667.2 → XP_014428153.1  neural cell adhesion molecule 1 isoform X8

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (9) summary
    pfam05887
    Location:767 → 850
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 412
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:428 → 496
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:613 → 696
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  11. XM_014572674.2 → XP_014428160.1  neural cell adhesion molecule 1 isoform X12

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (9) summary
    pfam05887
    Location:757 → 840
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:603 → 686
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  12. XM_006111236.3 → XP_006111298.1  neural cell adhesion molecule 1 isoform X11

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:602 → 685
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  13. XM_014572679.2 → XP_014428165.1  neural cell adhesion molecule 1 isoform X13

    UniProtKB/TrEMBL
    K7FGJ6
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:306 → 402
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:418 → 486
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:222 → 304
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:21 → 114
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:603 → 686
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain
Nucleotide Protein
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