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AGRN agrin [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102443508, updated on 10-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005856113.1 (4070234..4119033)

NW_005856113.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112546419 Neighboring gene uncharacterized LOC112546418 Neighboring gene agrin-like Neighboring gene uncharacterized LOC112546420 Neighboring gene uncharacterized LOC106732292 Neighboring gene tyrosine-protein phosphatase non-receptor type 11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005856113 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005856113.1 Reference PelSin_1.0 Primary Assembly

    Range
    4070234..4119033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025186663.1 → XP_025042448.1  agrin

    Conserved Domains (6) summary
    smart00200
    Location:191 → 315
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00053
    Location:880 → 911
    EGF; Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional ...
    cd00110
    Location:435 → 585
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00054
    Location:727 → 862
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:612 → 643
    EGF; EGF-like domain
    cl26386
    Location:2 → 152
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
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